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<!DOCTYPE html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US" xml:lang="en-US">
<head>
<title>RNA-Seq Sample Report</title>
<link rel="stylesheet" type="text/css" href="CSS/common.css" />
<script src="http://www.java.com/js/deployJava.js" type="text/javascript"></script>
<script src="http://genomeview.org/start/genomeview.js" type="text/javascript"></script>
<script src="http://ajax.googleapis.com/ajax/libs/jquery/1.7.1/jquery.min.js" type="text/javascript"></script>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
</head>
<body>
<script>  <!-- needed for genomeview communication -->
 instanceID = 'ALL'
</script>


       <script type="text/javascript"> 
           var instanceID="ALL";
    var gv_url= "http://www.broadinstitute.org/~bhaas/Trinity.fasta";
    var gv_config= "http://www.broadinstitute.org/~bhaas/gv_config.txt";
    var gv_location= null;
    var gv_extra    = "http://www.broadinstitute.org/~bhaas/best_candidates.gff3"
 +" http://www.broadinstitute.org/~bhaas/bowtie_out.coordSorted.sam.plus.bam";
              
    var wsUrl = "http://genomeview.org/start/launch.jnlp? --config " + gv_config + " --url " + gv_url + " " + gv_extra;
    

    function launchGV () {
                   
                  // launch as applet, but tied to existing page
                      //startGV(gv_url,gv_location,gv_config,gv_extra,500,500);
                   

                  // launch using webstart, remains active across multiple pages.
                      jQuery('#frame1').attr("src", wsUrl);

              }


         </script>

<iframe id="frame1" style="display:none"></iframe>
<div id='toolbar' style="border:1px solid black; margin:auto; width:60%; background-color:#004242">
    <button id='GenomeViewBttn'>GenomeView</button>
</div>

<script>
jQuery(function() { 
    jQuery('#GenomeViewBttn').click( function() { launchGV(); });
});
</script>
<ul>Example links:
<li><a href='javascript:void(0);' onClick="javascript:positionGV('comp65_c1_seq6:1:100');" >comp65_c1_seq6</a>
<li><a href='javascript:void(0);' onClick="javascript:positionGV('comp28_c0_seq1:1:100');" >comp28_c0_seq1</a>
<li><a href='javascript:void(0);' onClick="javascript:positionGV('comp33_c0_seq1:1:100');" >comp33_c0_seq1</a>
</ul>

</body>
</html>